Tutorials

Installation

1. Installing PACKMAN

Graphical User Interface (GUI)

1. PACKMAN GUI

Command Line Interface (CLI)

1. Hinge Prediction using Alpha Shape
2. hdANM CLI
3. Entropy Analysis CLI
4. DCI Analysis CLI

Application Programming Interface (API)

1. Using ‘Molecule’ to load and manupulate molecular structures. (Basics)
2. Hinge Prediction using Alpha Shape (API)
3. Using the concept to Compliance to study Molecular Structures
4. Using hd-ANM to study the global dynamics of the molecular structures
5. Entropy Analysis API
6. Using Gaussian Network Model (GNM)

Utilities (API)

1. Rotate specific bonds
2. Calculate Alpha Shape of the Protein